hyperspy.io_plugins package

Submodules

• hyperspy.io_plugins._hierarchical module
  • HierarchicalReader
    • HierarchicalReader.get_format_version()
    • HierarchicalReader.group2signaldict()
    • HierarchicalReader.read()
  • HierarchicalWriter
    • HierarchicalWriter.dict2group()
    • HierarchicalWriter.overwrite_dataset()
    • HierarchicalWriter.write_signal()
  • get_signal_chunks()
• hyperspy.io_plugins.blockfile module
  • file_writer()
  • get_default_header()
• hyperspy.io_plugins.bruker module
  • BCF_reader
    • BCF_reader.add_filename_to_general()
    • BCF_reader.check_index_valid()
    • BCF_reader.parse_hypermap()
  • HyperHeader
    • HyperHeader._parse_image()
    • HyperHeader._set_elements()
    • HyperHeader._set_images()
    • HyperHeader._set_microscope()
    • HyperHeader.calc_real_time()
    • HyperHeader.estimate_map_depth()
    • HyperHeader.get_acq_instrument_dict()
    • HyperHeader.get_consistent_min_channels()
    • HyperHeader.get_spectra_metadata()
  • SFSTreeItem
    • SFSTreeItem._filetime_to_unix()
    • SFSTreeItem._fill_pointer_table()
    • SFSTreeItem._iter_read_chunks()
    • SFSTreeItem._iter_read_compr_chunks()
    • SFSTreeItem.get_as_BytesIO_string()
    • SFSTreeItem.get_iter_and_properties()
    • SFSTreeItem.read_piece()
    • SFSTreeItem.setup_compression_metadata()
  • SFS_reader
    • SFS_reader.filename
    • SFS_reader._check_the_compresion()
    • SFS_reader._flat_items_to_dict()
    • SFS_reader._setup_vfs()
    • SFS_reader.get_file()
  • bcf_hyperspectra()
  • bcf_images()
  • bcf_reader()
  • guess_mode()
  • interpret()
  • parse_line()
  • py_parse_hypermap()
• hyperspy.io_plugins.dens module
• hyperspy.io_plugins.digital_micrograph module
  • DigitalMicrographReader
    • DigitalMicrographReader.get_image_dictionaries()
    • DigitalMicrographReader.parse_array_definition()
    • DigitalMicrographReader.parse_string_definition()
    • DigitalMicrographReader.parse_struct_definition()
    • DigitalMicrographReader.parse_tag_group()
    • DigitalMicrographReader.parse_tags()
    • DigitalMicrographReader.read_array()
    • DigitalMicrographReader.read_simple_data()
    • DigitalMicrographReader.read_string()
    • DigitalMicrographReader.read_struct()
  • file_reader()
• hyperspy.io_plugins.edax module
  • __get_ipr_header()
  • __get_spc_header()
  • _add_spc_metadata()
  • file_reader()
  • get_ipr_dtype_list()
  • get_spc_dtype_list()
  • get_spd_dtype_list()
  • spc_reader()
  • spd_reader()
• hyperspy.io_plugins.emd module
  • EMD
    • EMD.signals
    • EMD.user
    • EMD.microscope
    • EMD.sample
    • EMD.comments
    • EMD.add_signal()
    • EMD.load_from_emd()
    • EMD.log_info()
    • EMD.save_to_emd()
  • EMD_NCEM
    • EMD_NCEM.dictionaries
    • EMD_NCEM._get_emd_group_type()
    • EMD_NCEM._parse_axis()
    • EMD_NCEM._read_dataset()
    • EMD_NCEM._read_emd_version()
    • EMD_NCEM.find_dataset_paths()
    • EMD_NCEM.read_file()
    • EMD_NCEM.write_file()
  • FeiEMDReader
    • FeiEMDReader.dictionaries
    • FeiEMDReader.im_type
    • FeiEMDReader._read_image()
  • FeiSpectrumStream
    • FeiSpectrumStream.stream_to_array()
    • FeiSpectrumStream.stream_to_sparse_array()
  • file_reader()
  • file_writer()
  • is_EMD_NCEM()
  • is_EMD_Velox()
  • read_emd_version()
• hyperspy.io_plugins.empad module
• hyperspy.io_plugins.fei module
  • get_calibration_from_position()
  • readLELong()
  • readLELongLong()
  • readLEShort()
  • ser_reader()
• hyperspy.io_plugins.hspy module
  • HyperspyReader
  • HyperspyWriter
    • HyperspyWriter._get_object_dset()
  • file_reader()
  • file_writer()
• hyperspy.io_plugins.image module
  • file_reader()
  • file_writer()
• hyperspy.io_plugins.impulse module
• hyperspy.io_plugins.jeol module
  • _read_pts()
  • _readcube()
  • _readframe_dense()
  • _readframe_lazy()
  • file_reader()
• hyperspy.io_plugins.mrc module
• hyperspy.io_plugins.mrcz module
• hyperspy.io_plugins.msa module
  • parse_msa_string()
• hyperspy.io_plugins.netcdf module
• hyperspy.io_plugins.nexus module
  • _byte_to_string()
  • _extract_hdf_dataset()
  • _find_data()
  • _find_search_keys_in_dict()
  • _fix_exclusion_keys()
  • _get_nav_list()
  • _getlink()
  • _is_int()
  • _is_linear_axis()
  • _is_numeric_data()
  • _load_metadata()
  • _nexus_dataset_to_signal()
  • _parse_from_file()
  • _parse_to_file()
  • _text_split()
  • _write_nexus_attr()
  • _write_nexus_groups()
  • _write_signal()
  • file_reader()
  • file_writer()
  • list_datasets_in_file()
  • read_metadata_from_file()
• hyperspy.io_plugins.phenom module
• hyperspy.io_plugins.protochips module
• hyperspy.io_plugins.ripple module
  • file_reader()
  • parse_ripple()
  • read_raw()
  • write_raw()
• hyperspy.io_plugins.semper_unf module
  • SemperFormat
    • SemperFormat.data
    • SemperFormat.title
    • SemperFormat.offsets
    • SemperFormat.scales
    • SemperFormat.units
    • SemperFormat.metadata
    • SemperFormat.from_signal()
    • SemperFormat.load_from_unf()
    • SemperFormat.log_info()
    • SemperFormat.save_to_unf()
    • SemperFormat.to_signal()
  • pack_to_intbytes()
  • unpack_from_intbytes()
• hyperspy.io_plugins.sur module
  • DigitalSurfHandler
    • DigitalSurfHandler._MS_parse()
    • DigitalSurfHandler._append_work_dict_to_content()
    • DigitalSurfHandler._build_1D_series()
    • DigitalSurfHandler._build_RGB_image()
    • DigitalSurfHandler._build_RGB_surface()
    • DigitalSurfHandler._build_Tax()
    • DigitalSurfHandler._build_Xax()
    • DigitalSurfHandler._build_Yax()
    • DigitalSurfHandler._build_general_1D_data()
    • DigitalSurfHandler._build_hyperspectral_map()
    • DigitalSurfHandler._build_metadata()
    • DigitalSurfHandler._build_original_metadata()
    • DigitalSurfHandler._build_spectrum()
    • DigitalSurfHandler._build_sur_dict()
    • DigitalSurfHandler._build_surface()
    • DigitalSurfHandler._build_surface_series()
    • DigitalSurfHandler._check_comments()
    • DigitalSurfHandler._get_float()
    • DigitalSurfHandler._get_int16()
    • DigitalSurfHandler._get_int32()
    • DigitalSurfHandler._get_str()
    • DigitalSurfHandler._pack_data()
    • DigitalSurfHandler._read_sur_file()
    • DigitalSurfHandler._set_float()
    • DigitalSurfHandler._set_int32()
    • DigitalSurfHandler._set_metadata_and_original_metadata()
    • DigitalSurfHandler._set_str()
    • DigitalSurfHandler._unpack_data()
  • file_reader()
• hyperspy.io_plugins.tiff module
  • _axes_defaults()
  • _build_axes_dictionaries()
  • _get_hamamatsu_streak_description()
  • _get_scale_unit()
  • _get_tags_dict()
  • _imagej_description()
  • _is_streak_hamamatsu()
  • _order_axes_by_name()
  • file_reader()
  • file_writer()
• hyperspy.io_plugins.tvips module
  • _find_auto_scan_start_stop()
  • _guess_image_mode()
  • _is_valid_first_tvips_file()
  • file_reader()
  • file_writer()
• hyperspy.io_plugins.usid_hdf5 module
• hyperspy.io_plugins.zspy module
  • ZspyReader
  • ZspyWriter
    • ZspyWriter._get_object_dset()
    • ZspyWriter._store_data()
  • file_reader()
  • file_writer()

Module contents